GFW_rDNA_Raw_reads file contains raw nanopore reads extracted from a nanopore dataset readsf or the Golden-fronted Woodpecker (NCBI accession PRJNA598863) in FASTA format used to determine rDNA unit size. GFW_con_reads file contains raw nanopore reads individual rDNA unit sequences were extracted from to generate the consensus sequence in FASTA format for...

reads_analysed file contains raw nanopore reads extracted from a nanopore dataset readsf or the Tuatara (NCBI accession PRJNA445603) in FASTA format used to determine rDNA unit size.Con_reads files contain nanopore reads individual rDNA unit sequences were extracted from to generate the consensus sequence in FASTA format for the sole extant...

analysed_reads file contains raw nanopore reads extracted from a nanopore dataset readsf or the Tasmanian devil (NCBI accession PRJEB34649) in FASTA format used to determine rDNA unit size.. Con_reads files contain raw nanopore reads individual rDNA unit sequences were extracted from to generate the consensus sequence in FASTA format. Con_indiv_units...

MAFFT alignments of the Long and Short consensus sequences were generated for the human and Tasmanian Devil to determine where the change in rDNA unit size was occurring in each species.

Files containing reads selected at random from a Pacbio dataset (NCBI accession PRJEB7245) for a 0.6X Coverage assembly to generate a complete rDNA (S288C_0.66X_assembly_reads.fasta.gz), annotated assembly contig (annotated_rDNA_0.66X_assembly_contig4.geneious), lignment of the complete contig rDNA unit to a reference (U53879.1; RDN37; Chr XII, 2217.....

Analysed_contigs file contains PacBio contigs from a whole genome assembly of the Diamondback terrapin(PRJNA339452) in FASTA format used to determine rDNA unit size for the Diamondback terrapin. Con_reads files contain raw nanopore reads individual rDNA unit sequences were extracted from to generate the consensus sequence in FASTA format. Con_indiv_units...

Raw_read file contains nanopore reads in FASTA format analysed from a nanopore dataset (PRJNA200694) used to determine rDNA unit size for Humans. Con_reads files contain raw nanopore reads individual rDNA unit sequences were extracted from to generate the long and short consensus sequence in FASTA format. Con_indiv_units files contain individual rDNA unit...

RepeatMasker outpus (RM2_Human..._IGS.align) were used to annotate the long and short human rDNA consensus units (Repeat_annotated_Human_rDNA_consensus_long/short.geneious) generated using nanopore reads (NCBI accession PRJNA200694).The repeat-annotated long and short consensus sequences were aligned to compare repeat number, size and position...

RepeatMasker outputs (RM2_Tasmanian_devil.._IGS.align) were used to annotate the long and short human rDNA consensus units (AnnotatedTasmanian_devi_rDNA_consensus_long/short.geneious) generated using nanopore reads (NCBI accession PRJEB34649).The repeat-annotated long and short consensus IGS sequences were aligned to compare repeat number, size and...

RepeatMasker outputs (RM2_corrected_Mouse.._IGS.align) were used to annotate a Mouse IGS sequence extracted from a consensus unit (Genbank accession BK000964.3) (Repeat-annotated_Corrected_Mouse_rDNA.geneious).

Files containing PacBio reads selected by BLAST to generate assembly of a complete rDNA (Chimpanzee_rDNA_assembly_reads.fasta.gz), annotated assembly contig (annotated_Chimpanzee_seqsel_assembly_method_contig.geneious), annotated complete assembly (annotated_Chimpanzee_seqsel_rDNA.geneious). Alignment of the complete contig rDNA unit to a reference gene...

Alignment of the human long repeat-annotated IGS sequence to the mouse repeat-annotated sequence (Modified from BK000964.3) to identify differences in repeat number, type and length.

Files containing PacBio reads selected by BLAST to generate assembly of a complete rDNA (Platypus_rDNA_assembly_reads.fasta.gz), annotated assembly contig (Platypus_sequence_selection_assembly_annotated_contig_3.geneious), annotated complete assembly (Platypus_complete_rDNA_Sequence_Selection_Assembly.geneious) and partial units...

This catalogue is a collection of uniquely identified long-finned pilot whale dorsal fin photos from the east coast of Aotearoa/New Zealand between 2003-2019. Where possible there is a right and left side image of each dorsal fin. The photograph codes are as follows: NZ = New Zealand Gme = Globicephala melas (species name) XXX = unique number for each...