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RepeatMasker analysis of Mouse (Mus muscularis) IGS transposons
The University of AucklandRepeatMasker outputs (RM2_corrected_Mouse.._IGS.align) were used to annotate a Mouse IGS sequence extracted from a consensus unit (Genbank accession BK000964.3) (Repeat-annotated_Corrected_Mouse_rDNA.geneious).Created 1 May 2021 • Updated 23 March 2025 -
Chimpanzee PacBio assembly
The University of AucklandFiles containing PacBio reads selected by BLAST to generate assembly of a complete rDNA (Chimpanzee_rDNA_assembly_reads.fasta.gz), annotated assembly contig (annotated_Chimpanzee_seqsel_assembly_method_contig.geneious), annotated complete assembly (annotated_Chimpanzee_seqsel_rDNA.geneious). Alignment of the complete contig rDNA unit to a reference gene...Created 1 May 2021 • Updated 23 March 2025 -
Alignment of repeat-annotated Mouse IGS to repeat-annotated Human IGS ransposons
The University of AucklandAlignment of the human long repeat-annotated IGS sequence to the mouse repeat-annotated sequence (Modified from BK000964.3) to identify differences in repeat number, type and length.Created 1 May 2021 • Updated 23 March 2025 -
HiHi rDNA unit Measuring Spreadsheet
The University of AucklandExcel spreadsheet used to calculate the rDNA unit size of the HiHi from a BLAST output of nanopore reads. The BLAST output used to generate this spreadsheet was kindly provided by Dr Annabel Whibley of the University of Auckland.Created 1 May 2021 • Updated 23 March 2025 -
Platypus PacBio assembly
The University of AucklandFiles containing PacBio reads selected by BLAST to generate assembly of a complete rDNA (Platypus_rDNA_assembly_reads.fasta.gz), annotated assembly contig (Platypus_sequence_selection_assembly_annotated_contig_3.geneious), annotated complete assembly (Platypus_complete_rDNA_Sequence_Selection_Assembly.geneious) and partial units...Created 1 May 2021 • Updated 23 March 2025 -
Activity of the pure compounds (2E)–cillifuranone, taiwapyrone, and...
The University of AucklandThe ascomycete fungus Neodidymelliopsis sp. (ICMP 11463) was isolated in October 1991 from a leaf spot on New Zealand native Pittosporum. Fifty-five Potato Dextrose Agar plates were inoculated with ICMP 11463 and incubated at room temperature for 4 weeks. Fully grown fungal plates were freeze-dried (108.6 g, dry weight) and extracted with MeOH (2 × 500...Created 1 May 2021 • Updated 23 March 2025 -
Sediment particle velocity and activity during dune migration by Terwisscha...
The University of AucklandThe data being presented here is described and analyzed in:Terwisscha van Scheltinga, R. C., Coco, G., & Friedrich, H. (2021). Sediment particle velocity and activity during dune migration. Water Resources Research, 57, e2020WR029017. https:// doi.org/10.1029/2020WR0290171. The article is based on image files recording sediment motion over a submerged...Created 1 May 2021 • Updated 23 March 2025 -
crsp_compustatannual_merged.csv
The University of AucklandWe have already put together a set of monthly stock return data (from CRSP) merged with annual accounting data (from Compustat).Created 1 June 2021 • Updated 23 March 2025 -
CN-SDQ repeated experiment SPSS data file
The University of AucklandThis data file supports the journal article written by Tanja Sobko and Gavin Brown and which appears in 2021 in the journal Challenges. The paper is entitled The influence of connectedness to nature on psychological well-being: Evidence from the randomized controlled trial Play&Grow. Dr Sobko developed the Play&Grow intervention and collected all data. Dr...Created 1 June 2021 • Updated 23 March 2025 -
Technophobia dataset
The University of AucklandThis is a dataset on "technophobia" a socio-psychological construct, which is experienced by consumers who feel overloaded by the complexity of technology-related products. The dataset was used in the publications below and is available for use in replication and extension studies. Sinkovics, Rudolf R., Barbara Stöttinger, Bodo B. Schlegelmilch, and...Created 1 June 2021 • Updated 23 March 2025 -
Case Study Data Matrices
The University of AucklandEnclosed are case study qualitative and quantitative data used to populate fuzzy cognitive maps that provide a framework for analysis of drivers and barriers to implementation of coastal risk management projects.Created 1 June 2021 • Updated 23 March 2025 -
Supplementary data 4. SNP functional annotation and a list of the...
The University of AucklandWe identified that the AiD associated SNPs are located in the non-coding regions of the genome. Of those, 186 are pleiotropic SNPs (i.e., same loci associated with multiple AiDs) that were associated with more than two AiDs. Majority of them (N=60) are shared between Crohn's disease (CRD) and Ulcerative colitis (ULC). We have presented a list of...Created 1 April 2021 • Updated 23 March 2025 -
Knebel 2021 (JGR: Oceans)
The University of AucklandData sets associated with Knebel (2021): Porites Calcifying Fluid pH on Seasonal to Diurnal ScalesCreated 1 November 2020 • Updated 23 March 2025 -
The distribution of benthic amphipod crustaceans
The University of AucklandRaw dataCreated 1 July 2021 • Updated 23 March 2025 -
Metagenomic data (ECOBABe trial)
The University of AucklandThe ECOBABe Trial was a single-blinded randomised placebo-controlled pilot trial that assessed whether oral administration of maternal vaginal microbes could restore gut microbiome development in infants born by caesarean section (CS). The trial recruited 25 women having an elective CS and randomised their neonates 1:1 to receive a 3 ml solution of...Created 1 July 2021 • Updated 23 March 2025 -
Flow cytometry output (ECOBABe phase 1 experiment - microbial viability)
The University of AucklandVaginal seeding is an unverified procedure where caesarean section newborns are exposed to their mother’s vaginal fluids in an attempt to seed them with beneficial microbes. Extracting microbes from a vaginal swab and orally administering them in solution is one method of delivering the microbes to the baby’s gut. However, the viability of vaginal...Created 1 July 2021 • Updated 23 March 2025 -
Untangling the genetic link between type 1 and type 2 diabetes using...
The University of AucklandAll datasets and supplementary information for this article.Created 1 November 2020 • Updated 23 March 2025 -
Multiplex IHC of Human Olfactory Bulb
The University of AucklandImage files of multiplexed fluorescence immunohistochemistry on post-mortem human olfactory bulbs from Alzheimer's disease, Parkinson's disease and neurologically normal subjects.Please cite: Murray, H.C., Johnson, K., Sedlock, A. et al. Lamina-specific immunohistochemical signatures in the olfactory bulb of healthy, Alzheimer’s and Parkinson’s disease...Created 1 August 2021 • Updated 23 March 2025 -
Antibacterial activity of fungal isolates from the International Collection...
The University of AucklandWe screened 36 ICMP fungal isolates for antibacterial activity against Mycobacterium abscessus and M. marinum. Because of the slow growth of many mycobacterial species, we routinely use luciferase-tagged strains for our assays. M. abscessus BSG301 and M. marinum BSG101 (Dalton et al, 2017) are stable bioluminescent derivatives transformed with the...Created 1 August 2021 • Updated 23 March 2025 -
Data accompanying Anderson & Craig, Notornis 2003
The University of AucklandNesting data for bellbirds on Tiritiri Matangi Island 1977/78Resource Title: Breeding biology of bellbirds (Anthornis melanura) on Tiritiri Matangi IslandCreated 1 August 2021 • Updated 23 March 2025