Human rDNA unit size

Raw_read file contains nanopore reads in FASTA format analysed from a nanopore dataset (PRJNA200694) used to determine rDNA unit size for Humans.Con_reads files contain raw nanopore reads individual rDNA unit sequences were extracted from to generate the long and short consensus sequence in FASTA format.Con_indiv_units files contain individual rDNA unit sequences extracted from nanopore reads used to generate the long and short consensus sequence in FASTA format.Consensus_alignment files contains the alignement output in .geneious format.Annotated_Consensus files contains the two annotated consensus sequences in .geneious format.align_Human_long/short_con_with_ref file contains the rDNA consensus sequence aligned to a reference sequence (NCBI accession GL000220; see Agrawal & Ganley, 2018).Average rDNA unit size was generated using the included excel spreadsheet.

Rights

CC BY-SA 2.0

Data and Resources

Additional Info

Field Value
Theme
Author Emma Macdonald (9141500)
Maintainer
Source https://figshare.com/articles/dataset/Human_rDNA_unit_size/14479299
Source Created 2021-04-27T08:14:38Z
Source Modified 2021-04-27T08:14:38
Language English
Spatial
Source Identifier 10.17608/k6.auckland.14479299.v1
Dataset metadata created 1 May 2021, last updated 28 March 2025