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Groups: Land Organisations: Manaaki Whenua – Landcare Research Formats: R

  • Climatic limits of temperate rainforest tree species

    Manaaki Whenua – Landcare Research
    This project contains the data files and R script supporting the paper: Laughlin DC, Delzon S, Clearwater MJ, Bellingham PJ, McGlone MS, Richardson SJ 2020. Climatic limits of temperate rainforest tree species are explained by xylem embolism resistance among angiosperms but not among conifers. New Phytologist in press.
    Created 1 February 2024 Updated 1 February 2024
  • Biodiversity tool simulations

    Manaaki Whenua – Landcare Research
    ata simulations (and R-code) used to show how an evidence-based tool, designed for biodiversity assessments within New Zealand farm businesses, can be applied to: (1) explore the expected biodiversity impacts of different management strategies at the farm and industry levels, where those strategies are tailored to the biodiversity refuges available on the...
    Created 1 February 2024 Updated 1 February 2024
  • Optimising survey effort to monitor environmental variables

    Manaaki Whenua – Landcare Research
    A new statistical power analysis R package simr informs environmental monitoring design within New Zealand's main kiwifruit growing region (Bay of Plenty). The pilot data for 13 environmental variables were gathered from 30 orchards between 2004 and 2010 by the Agricultural Research Group on Sustainability (ARGOS). The data support the following journal...
    Created 1 February 2024 Updated 1 February 2024
  • Ashley Dene lysimeter experiment 1

    Manaaki Whenua – Landcare Research
    Processed DNA metabarcoding data and analysis code from an experiment to investigate temporal effects of labile carbon inputs on bacterial and fungal biodiversity in urine patches, relating to the paper Labile carbon inputs support the recovery of prokaryotic communities, but not fungal communities, from a simulated bovine urine event, by Andrew Dopheide,...
    Created 1 February 2024 Updated 1 February 2024
  • Multiple capture trap data

    Manaaki Whenua – Landcare Research
    Data and spatial model for assessing effectiveness of using multiple and single capture traps. The data support an article in PLoS ONE: Warburton, B., & Gormley, A. M. (2015). Optimising the Application of Multiple-Capture Traps for Invasive Species Management Using Spatial Simulation. PLoS ONE, 10(3), e0120373. doi:10.1371/journal.pone.0120373.
    Created 1 February 2024 Updated 1 February 2024
  • NZ Garden Bird Survey | Logo development

    Manaaki Whenua – Landcare Research
    Process used to select a logo for the NZ Garden Bird Survey. The NZGBS community was invited to vote and comment on eight candidate logo concepts. This work was undertaken as part of the 'Building Trustworthy Biodiversity Indicators' project funded by the Ministry for Business, Innovation and Employment.
    Created 1 February 2024 Updated 1 February 2024
  • Allometric power laws in NZ mountain beech forests

    Manaaki Whenua – Landcare Research
    Using above-ground biomass to measure the biomass of individual trees, we tested three power laws (Taylor's law; density-mass allometry; and variance-mass allometry) using 10 censuses of New Zealand mountain beech trees in 250 plots over 30 years on spatial scales ranging from 5 m to kilometers. The data support an article in Oikos : "Taylor's law and...
    Created 1 February 2024 Updated 1 February 2024
  • Black swan egg harvest experiment data

    Manaaki Whenua – Landcare Research
    Data on black swan egg-laying rates, egg hatching probability, and overall nest hatching success associated with different customary egg harvest regimes implemented at Te Waihora/Lake Ellesmere in 2018, and R script used to develop models of those relationships.
    Created 1 February 2024 Updated 1 February 2024
  • Biodiversity Uncertainty

    Manaaki Whenua – Landcare Research
    Data and R scripts used in paper: Mason NWH, Holdaway RJ, Richardson SJ. Incorporating measurement error in testing for changes in biodiversity. Methods Ecol Evol. 2018;9:1296–1307.
    Created 1 February 2024 Updated 1 February 2024
  • Computational reproducibility within the New Zealand Journal of Ecology

    Manaaki Whenua – Landcare Research
    R code to reproduce the figures used in: Etherington TR, Brock JMP, Perry GLW, Wyse SV (2021) Implementing the Transparency and Openness Promotion (TOP) Guidelines for data and code to support computational reproducibility within the New Zealand Journal of Ecology. New Zealand Journal of Ecology
    Created 1 February 2024 Updated 1 February 2024
  • Indices of possum abundance and browse at forest sites in New Zealand

    Manaaki Whenua – Landcare Research
    Data associated with paper: Holland, E. P., Gormley, A. M. and Pech, R. P. (2016), Species- and site-specific impacts of an invasive herbivore on tree survival in mixed forests. Ecol Evol. doi:10.1002/ece3.2002
    Created 1 February 2024 Updated 1 February 2024
  • Land use impacts on soil invertebrate biodiversity

    Manaaki Whenua – Landcare Research
    Soil invertebrates COI DNA metabarcoding data, analysis code, and outputs, relating to the paper Andrew Dopheide, Andreas Makiola, Kate H. Orwin, Robert J. Holdaway, Jamie R. Wood & Ian A. Dickie, 2020. Rarity is a more reliable indicator of land-use impacts on soil invertebrate communities than other diversity metrics. eLife 52787. Data is from 75...
    Created 1 February 2024 Updated 1 February 2024
  • Mycorrhizal communities of Lophomyrtus bullata

    Manaaki Whenua – Landcare Research
    Fungal ITS and 18S metabarcoding data associated with Lophomyrtus bullata, and associated code used to process and analyse the data. This relates to the paper The mycorrhizal communities of Lophomyrtus bullata Burret (Myrtaceae) within three natural forest associations of New Zealand, by Marley Ford, Mahajabeen Padamsee, Luitgard Schwendenmann, Andrew...
    Created 1 February 2024 Updated 1 February 2024