Land use impacts on soil invertebrate biodiversity

Data and Resources

• Bulk_invert_COI.zipZIP

  Raw Illumina MiSeq data from metabarcoding analysis of COI genes in 75 bulk invertebrate samples plus controls. (fastq.gz)

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• Bulk_inverts_otutable.txtTXT

  A table of OTU abundances detected in 75 bulk invertebrate samples plus control samples.

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• Bulk_inverts_metadata.txtTXT

  Sample metadata for 75 bulk invertebrate samples plus controls.

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• Bulk_inverts_taxonomy.txtTXT

  Taxonomic identification details for OTUs detected in 75 bulk invertebrate samples.

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• Bulk_inverts_tree.tretre

  A phylogenetic tree of COI OTU sequences from 75 bulk invertebrate samples.

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• Bioinformatic_processing.pypy

  Python code used to process raw sequence data from 75 bulk invertebrate samples into OTUs with taxonomic identifications.

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• Invertebrate_biodiversity_vs_landuse.RR

  R code used to generate biodiversity analysis results and figures used in the paper.

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• phylo_SES_calculations.RR

  R code used to calculate phylogenetic biodiversity standard effect size (SES) estimates, including for phylogenetic endemism, based on functions from R picante package.

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• Soil_chem_data.txtTXT

  Soil chemistry data from 75 sites and five land uses

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