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11 datasets found
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Rat uterus meshes
The University of AucklandRat uterus meshes General information This item contains surface and volumetric meshes of the rat uterus (AWA015_PTA_1_*) and the ovarian segment (AWA015_PTA_2_Ova_*) along with the fibres identified with structure tensors. They were generated from the muscle segmentation of uCT images. The rat was in the oestrus phase of its cycle. This item also...Created 27 October 2023 • Updated 31 March 2025 -
Structure tensor validation
The University of AucklandStructure tensor validation General information This item contains test data to validate the structure tensor algorithms and a supplemental paper describing how the data was generated and used. Contents The test_data.zip archive contains 101 slices of a cylinder (701x701 pixels) with two artificially created fibre orientations. The outer fibres are...Created 23 February 2024 • Updated 31 March 2025 -
uCT and histology datasets
The University of AucklanduCT and histology datasets General information The rat was in the oestrus phase of its cycle. All slices are along the transverse plane. The organ was stained with PhosphoTungstic Acid (PTA) and the histology slices used Hematoxylin and Eosin (HE) stain. Contents The AWA015_PTA_1_Rec_Trans.zip archive contains the original uCT dataset of the full rat...Created 27 October 2023 • Updated 31 March 2025 -
Proestrus datasets
The University of AucklandProestrus datasets General information The rats were in the proestrus stages of their cycle. All slices are along the transverse plane. The uteri were stained with PhosphoTungstic Acid (PTA). Contents There are two folders for two different rats with ID codes AWA026 and AWB018. Each folder contains a downsampled subfolder which contains the downsampled...Created 8 March 2025 • Updated 31 March 2025 -
Estrus datasets
The University of AucklandEstrus datasets General information The rats were in the estrus stages of their cycle. All slices are along the transverse plane. The uteri were stained with PhosphoTungstic Acid (PTA). Contents There are two folders for two different rats with ID codes AWA033 and AWB011. Each folder contains a downsampled subfolder which contains the downsampled uCT...Created 8 March 2025 • Updated 31 March 2025 -
Metestrus datasets
The University of AucklandMetestrus datasets General information The rats were in the metestrus stages of their cycle. All slices are along the transverse plane. The uteri were stained with PhosphoTungstic Acid (PTA). Contents There are two folders for two different rats with ID codes AWA030 and AWB008. Each folder contains a downsampled subfolder which contains the downsampled...Created 8 March 2025 • Updated 31 March 2025 -
Diestrus datasets
The University of AucklandDiestrus datasets General information The rats were in the diestrus stages of their cycle. All slices are along the transverse plane. The uteri were stained with PhosphoTungstic Acid (PTA). Contents There are two folders for two different rats with ID codes AWB003 and AWB012. Each folder contains a downsampled subfolder which contains the downsampled uCT...Created 8 March 2025 • Updated 31 March 2025 -
Fibre orientations
The University of AucklandFibre orientations General information The fibres were extracted from the micro-computed tomography data using structure tensors. They can be viewed with Cmgui using the .com files. The path for the set dir command in the .com files needs to be changed before visualising the fibres. The fibres were coloured based on the angle relative to the centreline of...Created 17 March 2025 • Updated 31 March 2025 -
Annotated meshes
The University of AucklandAnnotated meshes General information The meshes were generated from the micro-computed tomography data. The meshes use tetrahedral elements coloured based on the thickness of the myometrium. The thickness values were computed from the segmentation of the micro-computed tomography data and normalised by the weight of the animals. Contents There is one mesh...Created 19 March 2025 • Updated 31 March 2025 -
Estrus specific uterine meshes
The University of AucklandEstrus specific uterine meshes General information The meshes were created from micro-computed tomography data of the rat uterine muscle layers. There is one mesh per estrus stage. The meshes were annotated with the fibre orientations extracted from the micro-computed tomography data using structure tensors. The angles were coloured based on the angle...Created 24 March 2025 • Updated 31 March 2025 -
Idealised rat uterine meshes
The University of AucklandIdealised rat uterine meshes General information The meshes were created using the scaffold creator from MAPClient. The meshes were generated with different element resolutions. One mesh was annotated with the fibre orientations generated with a Laplace-Dirichlet rule-based algorithm. The angles were coloured based on the angle relative to the centerline...Created 24 March 2025 • Updated 31 March 2025
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