Appendix D Endophytic fungi from cabbage in New Zealand 2016

Table of fungal isolates recovered from cabbage (Brassica oleracea var capitata) in New Zealand on February 2016. Columns contain a recorded value for variables:frag_no - arbitrary tissue fragment numbering region - regions in New Zealand where cabbage plants were sampled (Canterbury – h, Nelson – m and Pukekohe – a).plant - arbitrary numbering of plants in given regionpart - cabbage tissue R- root, S -stem, L - leafmedium - cultivation medium - Potato dextrose agar (p), 1/4 strength potato dextrose agar (1), Sabouraud dextrose agar (s) and Aspergillus minimal medium (a)well - arbitrary numbering of wels on cultivation platefor plant2, part2, medium2 similar to abovefragment - code for tissue fragment from which given isolate originatedisolate - code for isolatedescription of morphotypesmycelium_color - colour of mycelium mycelium_color_under - colour of the bottom of cultivation dishmycelium_texture - texture of mycelim sclerotia - whether present or notspores - colour and texture of spores concentric on petri dish (conc), media_coloring - colouring of the cultivation media by growing isolate
colours white (w), grey(g), green(gn), brown(b), yellow(yel), black (bl), purple (pu), orange (o), pink (pi), beige (be), dark(dk), light(li), pinch (P) texture - fluffy (fl), growing in agar (ia), yeast-like (yes), chunky (ch) scant (s), compact (comp), flat(ft)
other abbreviations - somewhat (sw), in mycelium (im), vis (visible), dry (d), oozing (ooze), fragmente (frg), at the edge of colony (oe)sequence - ITS sequence MatchUNITE - match with UNITE databaseidentityUNITE - BLAST identity result for the best match with UNITE databaselengthUNITE - BLAST length result for the best match with UNITE databaselineageUNITE - taxonomy extracted from the best match with UNITE databasespeciesUNITE - species extracted from the best match with UNITE databasegenusUNITE- genus extracted from the best match with UNITE databaseidentityNCBI - BLAST identity result for the best match with NCBI databaseMatchNCBI - BLAST identity result for the best match with NCBI databasespeciesNCBI - species extracted from the best match with NCBI databasegenusNCBI - genus extracted from the best match with NCBI databaselengthNCBI - BLAST length result for the best match with NCBI databasespecies - species name genus - genus name identity - BLAST identity result for the best matchblastlength - BLAST length result for the best matchseqlength - length of sequencefamily - family nameorder - order nameclass - class namephylum - phylum name

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Author Michal Kuchar (7033145)
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Source https://figshare.com/articles/Appendix_D_Endophytic_fungi_from_cabbage_in_New_Zealand_2016/9122504
Created 2019-08-21T03:18:26Z
Date modified 2019-08-21T03:18:26
Language English
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Source Identifier 10.25400/lincolnuninz.9122504.v1
Record created September 1, 2019, Last Updated December 1, 2019