4 datasets found

  • Golden-fronted woodpecker rDNA unit size files

    The University of Auckland
    GFW_rDNA_Raw_reads file contains raw nanopore reads extracted from a nanopore dataset readsf or the Golden-fronted Woodpecker (NCBI accession PRJNA598863) in FASTA format used to determine rDNA unit size. GFW_con_reads file contains raw nanopore reads individual rDNA unit sequences were extracted from to generate the consensus sequence in FASTA format for...
    Created 1 May 2021 • Updated 1 April 2025

  • Alignments of Human and Tasmanian devil long and short consensus sequences

    The University of Auckland
    MAFFT alignments of the Long and Short consensus sequences were generated for the human and Tasmanian Devil to determine where the change in rDNA unit size was occurring in each species.
    Created 1 May 2021 • Updated 1 April 2025

  • RepeatMasker analysis of Human long and short consensus sequences.

    The University of Auckland
    RepeatMasker outpus (RM2_Human..._IGS.align) were used to annotate the long and short human rDNA consensus units (Repeat_annotated_Human_rDNA_consensus_long/short.geneious) generated using nanopore reads (NCBI accession PRJNA200694).The repeat-annotated long and short consensus sequences were aligned to compare repeat number, size and position...
    Created 1 May 2021 • Updated 1 April 2025

  • RepeatMasker analysis of Tasmanian devil long and short consensus sequences

    The University of Auckland
    RepeatMasker outputs (RM2_Tasmanian_devil.._IGS.align) were used to annotate the long and short human rDNA consensus units (AnnotatedTasmanian_devi_rDNA_consensus_long/short.geneious) generated using nanopore reads (NCBI accession PRJEB34649).The repeat-annotated long and short consensus IGS sequences were aligned to compare repeat number, size and...
    Created 1 May 2021 • Updated 1 April 2025
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