This is the refined transcriptome as described in a 2019 Data in Brief paper by White, Trought and Hopkins entitled 'The mixed liver and heart transcriptome dataset of the New Zealand brushtail possum, Trichosurus vulpecula'. doi.org/10.1016/j.dib.2019.104577 It was generated from one male brushtail possum, Trichosurus vulpecula, using two tissue types;...

Data supporting the paper: Asymmetric competition causes multimodal size distributions in spatially structured populations. Jorge Velázquez, Robert B. Allen, David A. Coomes, Markus P. Eichhorn. Proc. R. Soc. B 2016 283 20152404; doi:10.1098/rspb.2015.2404. Published 27 January 2016 These resources (data files) represent snapshots of data extracted from...

Data supporting Forsyth DM, Wilson DJ, Easdale TA, Kunstler G, Canham CD, Ruscoe WA, Wright EF, Murphy L, Gormley AM, Gaxiola A, Coomes DA. Century-scale effects of invasive deer and rodents on the dynamics of forests growing on soils of contrasting fertility. 2015. Ecological Monographs 85:157-180. http://dx.doi.org/10.1890/14-0389.1

Processed DNA metabarcoding data and analysis code from an experiment to investigate temporal effects of labile carbon inputs on bacterial and fungal biodiversity in urine patches, relating to the paper Labile carbon inputs support the recovery of prokaryotic communities, but not fungal communities, from a simulated bovine urine event, by Andrew Dopheide,...

Data for A History of Open Weather in New Zealand (HOWNZ): an open access 1 km resolution monthly 1910-2019 time-series of interpolated temperature and rainfall grids with associated uncertainty. The files use the open GeoTIFF geospatial data standard, that are compressed using the open 7z compression file format. There is data for both: nni: the variable...

Subset of samples used to develop the intergranular mixing particle size distribution model (IMP model). The model is able to derive the soil water retention curve using particle size distribution and saturated water content. Additional details of the data and the model can be found at https://doi.org/10.1016/j.jhydrol.2020.124597

Data for the analysis presented as Figs 1 and 2 in the paper Quijada et al. "A review of Hyphodiscaceae". The data provided includes the concatenated alignments, the partitions for each gene, the source of the DNA sequence data, and for each gene a summary of the model used and the number of informative sites. Analysis uses IQ-TREE, models selected using...

PyCrown - Fast raster-based individual tree segmentation for LiDAR data Author: Dr Jan Zörner (zoernerj@landcareresearch.co.nz) Published under GNU GPLv3 The most recent development version lives in the github-repository at: https://github.com/manaakiwhenua/pycrown Summary PyCrown is a Python package for identifying tree top positions in a canopy height...

Bioinformatic pipeline, analysis and DNA dataset relating to the publication: Wood, J. R., R. J. Holdaway, K. H. Orwin, C. Morse, K. I. Bonner, C. Davis, N. Bolstridge, and I. A. Dickie. 2017. No single driver of biodiversity: divergent responses of multiple taxa across land use types. Ecosphere 00(00):e01997. 10.1002/ecs2.1997

Processed DNA metabarcoding data and analysis code from Ashley Dene deep soil cores analysis project, relating to the manuscript: Depth-structuring of multi-kingdom soil communities in agricultural pastures (2021), by Andrew Dopheide, Carina Davis, Jonathan Nuñez, Graeme Rogers, David Whitehead, and Gwen-Aëlle Grelet.

Supplementary data for a three papers describing three new yeasts from New Zealand forests

Species of rust, accession number, and GenBank numbers of taxa included in the analyses.

Data from paper in PLoS ONE: Thomson FJ, Auld TD, Ramp D, Kingsford RT. A Switch in Keystone Seed-Dispersing Ant Genera between Two Elevations for a Myrmecochorous Plant, Acacia terminalis. Please cite this when using the data.

Resource requirements (feeding and nesting) for selected New Zealand bird species and the spatial availability of these resources based on New Zealand LCDB3 cover classes

Data for the analysis presented in Fig 1 in the paper Quijada et al. 20xx, "Apothecial ancestry, evolution, and re-evolution in Thelebolales (Leotiomycetes, Fungi)" The data provided includes the concatenated alignment, the partitions for each gene, the source of the DNA sequence data, and for each gene a summary of the model used and the number of...

Data on black swan egg-laying rates, egg hatching probability, and overall nest hatching success associated with different customary egg harvest regimes implemented at Te Waihora/Lake Ellesmere in 2018, and R script used to develop models of those relationships.

This dataset contains the databases (csv format) on the population and spatial ecology of ship rats (Rattus rattus), Norway rats (Rattus norvegicus), and house mice (Mus musculus). The file "Bibliography.docx" contains the list of references used in: Garcia-Diaz, P. (2019). Systematic review of the population and spatial ecology of invasive rats and house...

Supplemental material for manuscript in review at Biological Invasions ("Confirming the broadscale eradication success of nutria (Myocastor coypus) from the Delmarva Peninsula, USA")

Data supporting PLOS ONE paper: Allen RB, Forsyth DM, Allen RKJ, Affeld K, MacKenzie DI (2015) Solar Radiation Determines Site Occupancy of Coexisting Tropical and Temperate Deer Species Introduced to New Zealand Forests. PLoS ONE 10(6): e0128924. (doi:10.1371/journal.pone.0128924).

Alignment of ordinal and quantitative species abundance and size indices for the detection of shifting baseline syndrome Data associated with the publication Lyver, P.O'B. Timoti, P., Richardson, S.J. and Gormley, A.M. (2021). Alignment of ordinal and quantitative species abundance and size indices for the detection of shifting baseline syndrome....