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Rowi virus sequence
Manaaki Whenua – Landcare ResearchThe virus was found from a collaboration between Landcare Research (Dan White, Dan Tompkins), ESR (Richard Hall), DOC (Kate McInnes) and Massey University (Brett Gartrell). Some rowi kiwi were being translocated from a crèche in Marlborough Sounds to Wellington Zoo as they showed signs of a verminous dermatitis. De novo metagenomic sequencing was done on...Created 1 February 2024 • Updated 1 February 2024 -
Data - N fixing invader effects on litter decomposition
Manaaki Whenua – Landcare ResearchData for paper: Invasive N-fixer Impacts on Litter Decomposition Driven by Changes to Soil Properties Not Litter Quality. Broadbent, A.A.D., Orwin, K.H., Peltzer, D.A. et al. Ecosystems (2017) 20: 1151. https://doi.org/10.1007/s10021-016-0099-3Created 1 February 2024 • Updated 1 February 2024 -
Multimodal size distributions in spatially-structured populations
Manaaki Whenua – Landcare ResearchData supporting the paper: Asymmetric competition causes multimodal size distributions in spatially structured populations. Jorge Velázquez, Robert B. Allen, David A. Coomes, Markus P. Eichhorn. Proc. R. Soc. B 2016 283 20152404; doi:10.1098/rspb.2015.2404. Published 27 January 2016 These resources (data files) represent snapshots of data extracted from...Created 1 February 2024 • Updated 1 February 2024 -
Data for A History of Open Temperature and Rainfall with Uncertainty in New...
Manaaki Whenua – Landcare ResearchData for A History of Open Weather in New Zealand (HOWNZ): an open access 1 km resolution monthly 1910-2019 time-series of interpolated temperature and rainfall grids with associated uncertainty. The files use the open GeoTIFF geospatial data standard, that are compressed using the open 7z compression file format. There is data for both: nni: the variable...Created 1 February 2024 • Updated 1 February 2024 -
Next Generation Biodiversity Assessment Phase I
Manaaki Whenua – Landcare ResearchBioinformatic pipeline, analysis and DNA dataset relating to the publication: Wood, J. R., R. J. Holdaway, K. H. Orwin, C. Morse, K. I. Bonner, C. Davis, N. Bolstridge, and I. A. Dickie. 2017. No single driver of biodiversity: divergent responses of multiple taxa across land use types. Ecosphere 00(00):e01997. 10.1002/ecs2.1997Created 1 February 2024 • Updated 1 February 2024 -
Novel yeasts from New Zealand forests
Manaaki Whenua – Landcare ResearchSupplementary data for a three papers describing three new yeasts from New Zealand forestsCreated 1 February 2024 • Updated 1 February 2024 -
Puccinia otagensis
Manaaki Whenua – Landcare ResearchSpecies of rust, accession number, and GenBank numbers of taxa included in the analyses.Created 1 February 2024 • Updated 1 February 2024 -
A Switch in Keystone Seed-Dispersing Ant Genera between Two Elevations for a...
Manaaki Whenua – Landcare ResearchData from paper in PLoS ONE: Thomson FJ, Auld TD, Ramp D, Kingsford RT. A Switch in Keystone Seed-Dispersing Ant Genera between Two Elevations for a Myrmecochorous Plant, Acacia terminalis. Please cite this when using the data.Created 1 February 2024 • Updated 1 February 2024 -
Thelebolales DNA data, Quijada et al. 20xx
Manaaki Whenua – Landcare ResearchData for the analysis presented in Fig 1 in the paper Quijada et al. 20xx, "Apothecial ancestry, evolution, and re-evolution in Thelebolales (Leotiomycetes, Fungi)" The data provided includes the concatenated alignment, the partitions for each gene, the source of the DNA sequence data, and for each gene a summary of the model used and the number of...Created 1 February 2024 • Updated 1 February 2024 -
Black swan egg harvest experiment data
Manaaki Whenua – Landcare ResearchData on black swan egg-laying rates, egg hatching probability, and overall nest hatching success associated with different customary egg harvest regimes implemented at Te Waihora/Lake Ellesmere in 2018, and R script used to develop models of those relationships.Created 1 February 2024 • Updated 1 February 2024 -
Rodent review datasets
Manaaki Whenua – Landcare ResearchThis dataset contains the databases (csv format) on the population and spatial ecology of ship rats (Rattus rattus), Norway rats (Rattus norvegicus), and house mice (Mus musculus). The file "Bibliography.docx" contains the list of references used in: Garcia-Diaz, P. (2019). Systematic review of the population and spatial ecology of invasive rats and house...Created 1 February 2024 • Updated 1 February 2024 -
Confirming the broadscale eradication success of nutria
Manaaki Whenua – Landcare ResearchSupplemental material for manuscript in review at Biological Invasions ("Confirming the broadscale eradication success of nutria (Myocastor coypus) from the Delmarva Peninsula, USA")Created 1 February 2024 • Updated 1 February 2024 -
Solar radiation and site occupancy of introduced deer in New Zealand
Manaaki Whenua – Landcare ResearchData supporting PLOS ONE paper: Allen RB, Forsyth DM, Allen RKJ, Affeld K, MacKenzie DI (2015) Solar Radiation Determines Site Occupancy of Coexisting Tropical and Temperate Deer Species Introduced to New Zealand Forests. PLoS ONE 10(6): e0128924. (doi:10.1371/journal.pone.0128924).Created 1 February 2024 • Updated 1 February 2024 -
Alignment of ordinal and quantitative species abundance and size indices
Manaaki Whenua – Landcare ResearchAlignment of ordinal and quantitative species abundance and size indices for the detection of shifting baseline syndrome Data associated with the publication Lyver, P.O'B. Timoti, P., Richardson, S.J. and Gormley, A.M. (2021). Alignment of ordinal and quantitative species abundance and size indices for the detection of shifting baseline syndrome....Created 1 February 2024 • Updated 1 February 2024 -
Possum network adjacency matrices
Manaaki Whenua – Landcare ResearchThe adjacency matrices for the possum contact networks at four sites (A, B, C, D) in the Orongorongo valley, New Zealand. Social contact network data associated with James et al 2017 in submission to Royal Society Open Science. Each data sheet gives the adjacency matrix for individual possums observed at that observation site. Row i, Column j 1 = contact...Created 1 February 2024 • Updated 1 February 2024 -
Tricladiaceae fam. nov. (Helotiales, Leotiomycetes)
Manaaki Whenua – Landcare ResearchAlignments for each of the genes used in the multigene phylogeny (Fig 1) and the ITS phylogeny (Fig 2) in paper published in Fungal Systematics and Evolution 6: 233-242, 2020. doi.org/10.3114/fuse.2020.06.10Created 1 February 2024 • Updated 1 February 2024 -
Supplementary data for publication: First Report of Ralstonia...
Manaaki Whenua – Landcare ResearchAdditional information on the strains and sequences used in this study: Ireland KB, Weir BS, Cother EJ, Phantavong S, Phitsanoukane P, Vongvichid K, Vongphachanh PP, Songvilay P, Chittarath K, Sayapatha S, Walsh J, Turner S, Park D, Tesoriero LA, Vilavong S, Duckitt GS, Burgess LW 2016. First report of Ralstonia pseudosolanacearum in the Lao PDR....Created 1 February 2024 • Updated 1 February 2024 -
Gravel Beach Plant Community Structure
Manaaki Whenua – Landcare ResearchThese data support the following publication: Arnst, E. et al. 2021. Resource competition, not facilitation, structures gravel beach plant communities. Journal of Vegetation Science. We describe how plant–plant interactions are mediated by environmental factors to influence plant community structure on gravel beaches based on observational studies and two...Created 1 February 2024 • Updated 1 February 2024
